PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001232.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 415aa    MW: 43635.1 Da    PI: 7.6381
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001232.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.91.3e-4092194289
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                              ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s
  Itr_sc001232.1_g00004.1  92 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMS 177
                              789******************************************************************99987777777777655 PP

                      TCP  87 sg..............k 89 
                               +              +
  Itr_sc001232.1_g00004.1 178 VPsqlrsqyfnpnfslS 194
                              55444333444444440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-4296271IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92398152IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MERGGDDHLH HHHHHHHHHN RRPTFPFQLL EKKEDEACSS SSSSSATTTT TNTAIVPYPS  60
LAISSSVDTS GANPNAAASA AAASAEPSKK PPPKRTSTKD RHTKVDGRGR RIRMPALCAA  120
RVFQLTRELG HKSDGETIEW LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSSMSVPS  180
QLRSQYFNPN FSLSQRRSLF PAGIGLSPAD NSATTLLNFQ AANININNPS MNLSAAKPEL  240
RDNSIDLTEP TAEEEESIGR KRRPEQDLQH QMGSYLLQSS AGTMPASHAS VPANFWMVTN  300
STNPVMGGAG GDPIWTFPSV SNNAAAAAAL YRGTMSSGLH FMNFPTPVAL LPSQQLGANI  360
GGGGGGNGLG EGQLGMFAGL NPYHRSGGGG GGVSESQASG SHSHHGGDDR PDTTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642407e-60AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBankAP0035137e-60AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBankAP0035697e-60AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149627e-60AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126147e-60CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472329.11e-175PREDICTED: transcription factor TCP14-like
SwissprotQ93Z004e-62TCP14_ARATH; Transcription factor TCP14
TrEMBLM1D6K81e-161M1D6K8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000831481e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.11e-46TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14